Astalavista - Alternative splicing transcriptional landscape visualization tool | Tool name | Astalavista - Alternative splicing transcriptional landscape visualization tool |
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| URL | http://genome.crg.es/astalavista/ |
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| Important features | Identifies complex Alternative Splice events by comparing all given transcripts. |
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| Citations | Foissac S, Sammeth M. ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets. Nucleic AcIDs Res. 2007 Jul;35(Web Server issue):W297-9. Epub 2007 May 7. PubMed PMID: 17485470; PubMed
Central PMCID: PMC1933205.
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| Year of publication | 2007 |
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| Rank by usage frequency | 100 |
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| Comments | 1) The results can be browsed on UCSC browser. 2)Results can be downloaded in GTF or ASTA format. 3) Splice site details include the chromosome number, and the position of Alternative Splice sites. 4) Intron- Exon structure is also shown. 5) Types of Alternative Splice Events include exon skipping, alt acceptor and intron retention. |
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| Function | Number of splice events, Types of alternative splice events, Display of splice events, Splice site details, Species, Finds alternative splicing in human, Finds alternative splicing in rat, Finds alternative splicing in chicken, Finds alternative splicing in dog, Finds alternative splicing in cow, Finds alternative splicing in Drosophila, Finds alternative splicing in other species |
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| Category | Online, Downloadable, Online/ Downloadable |
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| Input file format | GTF annotation or a list of genes/ transcripts/ proteins. |
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| Output file format | GTF or ASTA format |
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| Limitation | |
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